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Commented Issue: Portion of show fails to merge [1805]

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I'm still a bit of a newbie, so my apologies ahead of time if I missed something obvious.
Using version 2.14 with donor version of comskip. My first couple conversions went smoothly. Have been reviewing the .mp4s side by side with the wtv originals to see if I need to make any tweaks to comskip.
Was reviewing an episode of Lost Girl when I noticed the next to last portion of the show was missing. Originally tried some comskip tweaks with no success. When I processed it with comskip standalone, the pieces were marked properly. I reviewed the log in MCE and the breaks were also identified properly. I processed it again looking at the working directory, pausing between steps, and saw that comskip processed it properly and the 6 individual segments were created. I opened segment 5 (2989_3358) in vlc and it was the right piece and played properly. When the combined .ts file was created, though, it was missing. Have uploaded the log file and some screen shots. Hope they help. The original .wtv and processed .mp4 are around 1.5 gig and they'll take forever with my connection, but I can mail them if it helps.
Comments: ** Comment from web user: Staubsea **

Yeah, that sounds a lot better than my meat cleaver. Is that using ffmpeg as the merge? Once I noticed the aspect ratio difference, I went off in another direction and never tried it out.


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